Annotator +

Get annotations for biomedical text with classes from the ontologies

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Start typing to select ontologies or leave blank to use all
Score annotations following the previous 2009 NCBO measure (old) or the C-Value measure (cvalue). If hierarchy expansion is used, then prefer cvalueh.
Specify the minimum score value for annotations
Specify the minimum position in the scoring distribution (between 1 and 100)
Detect if a concept has been negated (affirmed, negated, possible)
Detect who experienced the each identified concept (patient, other)
Detect when the annotated concept occurred (recent, historical, hypothetical)


Class filter
Ontology filter
Type filter
UMLS Sem Type Context Matched Class filter
Matched Ontology filter
Score Negation Experiencer Temporality
Format results as:
Reproduce these results using the
Additional parameters explained at Annotator API documentation